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VAMP 0.3.3.1 documentation
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Virus AsseMbly Pipeline (VAMP) documentation
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Contents:
Introduction
Installation
VAMP
Third Party Tools
Python Dependencies
Non-root users
Installation Tips
Usage
PreProcessing
Short Read de novo Assembly
Contig Assembly
Reference Guided Scaffold Assembly
Genome Annotation and Comparison
Commands
Modules
vamp.utils
seq_utils.convert_coordinates
seq_utils.fasta_from_gff
seq_utils.summarize_alignments
seq_utils.utils
Indices and tables
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